[maker-devel] MAKER / RepeatRunner configuration issue

[Carson Holt]

Could you give me the full output of this command -->
df -h /Volumes/Qnap/projects/projectAnwar_SNGN0016AA-A

I'm really mostly interested in the mount information.  Some non-traditional
network storage implementations can induce odd behaviors (for example by not
supporting operations like hard links, etc.).

--Carson


From:  Dave Messina <online at davemessina.com>
Date:  Monday, May 5, 2014 at 12:05 PM
To:  Carson Holt <carsonhh at gmail.com>
Cc:  <maker-devel at yandell-lab.org>
Subject:  Re: [maker-devel] MAKER / RepeatRunner configuration issue

Thanks for your quick reply, Carson.

I'm using BLAST+ version 2.2.28, and even after upgrading from MAKER 2.31 to
2.31.3, unfortunately I'm still seeing the same issue.

I've uploaded a new tarball containing the latest (failed) output on the dpp
sample data.

Any thoughts you have on how to resolve this would be great.


Thanks!
Dave




On Mon, May 5, 2014 at 11:53 AM, Carson Holt <carsonhh at gmail.com> wrote:
> Use BLAST+ version 2.2.28.  Also Make sure you are not using an old version of
> MAKER (2.31.3 is current).
> 
> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/
> 
> --Carson
> 
> 
> From:  Dave Messina <online at davemessina.com>
> Date:  Monday, May 5, 2014 at 10:48 AM
> To:  <maker-devel at yandell-lab.org>
> Subject:  [maker-devel] MAKER / RepeatRunner configuration issue
> 
> Hi,
> 
> Even with the sample data, I'm getting a "Sequence contains no data" error
> from blastx during the RepeatRunner phase.
> 
> I've uploaded a tarball with my run on the dpp sample data to the MAKER File
> Upload site (filename maker_test.tgz).
> 
> Could you please take a look and give me your thoughts?
> 
> 
> Thanks!
> Dave
> 
> 
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> er-devel_yandell-lab.org



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