[maker-devel] MAKER / RepeatRunner configuration issue

[Dave Messina]

Hi Carson,

On Mon, May 5, 2014 at 2:44 PM, Carson Holt <carsonhh at gmail.com> wrote:

> df -h /Volumes/Qnap/projects/projectAnwar_SNGN0016AA-A
>

Filesystem    Type    Size  Used Avail Use% Mounted on
10.0.1.128:/projects
               nfs     13T  9.6T  3.1T  76% /Volumes/Qnap

That one is on NFS, although the second tarball I uploaded was done in the
/tmp dir, and that's on a local disk:

Filesystem    Type    Size  Used Avail Use% Mounted on
/dev/mapper/vg_d5-lv_root
              ext4     50G  8.9G   38G  19% /

>
>    1. Is you /tmp directory full (or whatever you have $TMPDIR
>    environmental variable is set to). Use 'df -h /tmp' to check.
>
>
$ df -h /tmp
Filesystem    Type    Size  Used Avail Use% Mounted on
/dev/mapper/vg_d5-lv_root
              ext4     50G  8.9G   38G  19% /


>
>    1. Are you running in a directory on an NFS drive?  Is it true NFS or
>    is it something like FUSE.
>
> Same error on true NFS or on local disk.



>
>    1. Is your current working directory full.
>
> No.



>
>    1. Are you setting TMP= in the control files to either an NFS mounted
>    location or an in memory mounted location.  Same issue if you are setting
>    the system's TMPDIR environmental variable to one of these.
>
> I tried setting it to /tmp just to be sure (no difference).


>
>    1. Is your default /tmp directory in fact locally mounted (some
>    clusters set this to in memory scratch).
>
> Yes.


>
>    1. Even though you already checked, humor me and run this exact
>    command --> /Volumes/Qnap/external/Linux_x86_64/ncbi-blast/bin/blastx
>    -version
>
>
$ /Volumes/Qnap/external/Linux_x86_64/ncbi-blast/bin/blastx -version
blastx: 2.2.28+
Package: blast 2.2.28, build Mar 12 2013 16:52:31



Thanks so much for your help.

Best,
Dave
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