[maker-devel] Mapping gene names

[Torsten Seemann]

Carson & Shaun

>  It doesn’t appear to support eukaryotes though.
>
> Barrnap supports bacteria, archaea, mitochondria and eukaryotes. The barrnap
> --help output seems to be out of date.
>
> Barrnap predicts the location of ribosomal RNA genes in genomes. It
> supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria
> (12S,16S) and eukaryotes (5S,5.8S,28S,18S).
>
> It does support eukaryota and mitochondria, I just forgot to push the
documentation changes. This has been resolved now in the 0.4.2 release.

  --kingdom [X]     Kingdom: euk arc bac mito (default 'bac')

Next release 0.5 will have an 'accurate' mode which will fine tune the
predictions using cmalign glocal alignment.

Thanks for your interest!

-- 

*--Dr Torsten Seemann--Victorian Bioinformatics Consortium, Monash
University, AUSTRALIA*

*--Life Sciences Computation Centre, VLSCI, Parkville, AUSTRALIA
--http://www.bioinformatics.net.au/ <http://www.bioinformatics.net.au/>*
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