[maker-devel] Question about 'keep_pred' setting

[Daniel Ence]

Hi Daniel,

Your interpretation of the code is correct. keep_preds is a binary setting. There's been some discussion behind-the-scenes about making it more flexible, but that hasn't been implemented yet. We need to fix what it says in the control file.


Daniel Ence
Graduate Student
dence at genetics.utah.edu<mailto:dence at genetics.utah.edu>
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330

On May 29, 2014, at 2:37 PM, Daniel Standage <daniel.standage at gmail.com<mailto:daniel.standage at gmail.com>>
 wrote:

Good afternoon!

I have a quick question about the keep_pred setting in Maker. In older versions of Maker, this was a binary value indicating whether unsupported predictions should be kept. I'm now using Maker 2.31.3, where it's described as a scaled value indicating a "concordance threshold" for unsupported predictions. As far as I can tell from the code, however, it's still treated in the same way as before.

Could you briefly describe the motivation for this setting and the intended (although possibly incomplete) change in its functionality in new versions of Maker?

Thanks!

--
Daniel S. Standage
Ph.D. Candidate
Computational Genome Science Laboratory
Indiana University
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