[maker-devel] Question about 'keep_pred' setting

[Daniel Standage]

Thanks.

Just curious: how would the intended behavior differ if keep_pred was set
to, say, 0.5, instead of 0 or 1?


--
Daniel S. Standage
Ph.D. Candidate
Computational Genome Science Laboratory
Indiana University


On Thu, May 29, 2014 at 4:44 PM, Daniel Ence <dence at genetics.utah.edu>
wrote:

>  Hi Daniel,
>
>  Your interpretation of the code is correct. keep_preds is a binary
> setting. There's been some discussion behind-the-scenes about making it
> more flexible, but that hasn't been implemented yet. We need to fix what it
> says in the control file.
>
>
>   Daniel Ence
> Graduate Student
> dence at genetics.utah.edu
> Eccles Institute of Human Genetics
> University of Utah
> 15 North 2030 East, Room 2100
> Salt Lake City, UT 84112-5330
>
>  On May 29, 2014, at 2:37 PM, Daniel Standage <daniel.standage at gmail.com>
>  wrote:
>
>   Good afternoon!
>
> I have a quick question about the keep_pred setting in Maker. In older
> versions of Maker, this was a binary value indicating whether unsupported
> predictions should be kept. I'm now using Maker 2.31.3, where it's
> described as a scaled value indicating a "concordance threshold" for
> unsupported predictions. As far as I can tell from the code, however, it's
> still treated in the same way as before.
>
>  Could you briefly describe the motivation for this setting and the
> intended (although possibly incomplete) change in its functionality in new
> versions of Maker?
>
> Thanks!
>
> --
> Daniel S. Standage
> Ph.D. Candidate
> Computational Genome Science Laboratory
> Indiana University
>   _______________________________________________
> maker-devel mailing list
> maker-devel at box290.bluehost.com
> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20140529/63a8d0ae/attachment-0003.html>