[maker-devel] running Maker but skipping first steps

[Muriel Gros-Balthazard]

Hello,

I want to run Maker but I would like to skip the first steps :
STATUS: Parsing control files...
STATUS: Processing and indexing input FASTA files...
STATUS: Setting up database for any GFF3 input...
A data structure will be created for you at:
/Data/Genomics/GeneAnnotation/Maker_pipeline/5_Run_Maker/Pdac_ref2013s.maker.output/Pdac_ref2013s_datastore

To access files for individual sequences use the datastore index:
/Data/Genomics/GeneAnnotation/Maker_pipeline/5_Run_Maker/Pdac_ref2013s.maker.output/Pdac_ref2013s_master_datastore_index.log

Indeed, there was an error in RepeatMasking (and I reinstalled 
RepeatMasker) but I believe that the previous steps are always the same.
Is there a way to run Maker so that it doesn't run this first steps 
again given that the control files didn't change, the fasta files are 
already indexed and the database of gff3 is set up ?

Thank you !

Muriel