[maker-devel] Genbank submission

[Fields, Christopher J]

We’ve been using GAG (mentioned in this thread), though with some fiddling.  I have heard that ENA has a much easier submission process.

chris

On May 15, 2015, at 10:48 AM, Carson Holt <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:

Here is an archived thread on this that might be useful as well —>

https://groups.google.com/forum/#!searchin/maker-devel/genbank/maker-devel/qypkypBXVjs/aJACj38DpxMJ

—Carson


On May 15, 2015, at 1:08 AM, Bert Brutzel <bertbrutzel at googlemail.com<mailto:bertbrutzel at googlemail.com>> wrote:

Dear All,

how to I reformat MAKER output to valid .tbl files for Genbank submission?
I already tried quite some routes of formating the .gff to a .tbl (e.g. sed+awk+GAG....) but I simply run into to many problems? I as well tried to load the data into a chado, but this took over two weeks and exited with errors. Maybe someone who already submitted their MAKER annotated genome to Genbank can help me...PLEASE.

Thank you very much,
Bert

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