[maker-devel] maker-devel Digest, Vol 84, Issue 8

[Scott Geib]

If anyone has bugs or suggestions for gag, let us know and we can modify.
Right now we are fixing some bugs and applying to new dataset, so good time
to add anything people might find useful. email myself or Brian (
bhall7 at hawaii.edu)
Thanks,

Scott

On Sat, May 16, 2015 at 8:00 AM, <maker-devel-request at yandell-lab.org>
wrote:

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> Today's Topics:
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>    1. Re: Genbank submission (Fields, Christopher J)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sat, 16 May 2015 15:51:49 +0000
> From: "Fields, Christopher J" <cjfields at illinois.edu>
> To: Carson Holt <carsonhh at gmail.com>
> Cc: "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>,
> Bert
>         Brutzel <bertbrutzel at googlemail.com>
> Subject: Re: [maker-devel] Genbank submission
> Message-ID: <3A43AEA3-A63A-4AC4-81A3-DA165F048722 at illinois.edu>
> Content-Type: text/plain; charset="utf-8"
>
> We?ve been using GAG (mentioned in this thread), though with some
> fiddling.  I have heard that ENA has a much easier submission process.
>
> chris
>
> On May 15, 2015, at 10:48 AM, Carson Holt <carsonhh at gmail.com<mailto:
> carsonhh at gmail.com>> wrote:
>
> Here is an archived thread on this that might be useful as well ?>
>
>
> https://groups.google.com/forum/#!searchin/maker-devel/genbank/maker-devel/qypkypBXVjs/aJACj38DpxMJ
>
> ?Carson
>
>
> On May 15, 2015, at 1:08 AM, Bert Brutzel <bertbrutzel at googlemail.com
> <mailto:bertbrutzel at googlemail.com>> wrote:
>
> Dear All,
>
> how to I reformat MAKER output to valid .tbl files for Genbank submission?
> I already tried quite some routes of formating the .gff to a .tbl (e.g.
> sed+awk+GAG....) but I simply run into to many problems? I as well tried to
> load the data into a chado, but this took over two weeks and exited with
> errors. Maybe someone who already submitted their MAKER annotated genome to
> Genbank can help me...PLEASE.
>
> Thank you very much,
> Bert
>
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