[maker-devel] Genbank submission

[Robert King]

Get the GFF file ready from maker and the fasta file. I then edit in geneious and export as embl format but we pay for this so you may not have but if got your end gff file by whatever means then use seqret to convert too. https://www.biostars.org/p/72220/

Not submitted to ncbi because I submit to ENA and they have a special header for embl format which means have to edit before submitting to them.

Rob

-----Original Message-----
From: maker-devel [mailto:maker-devel-bounces at yandell-lab.org] On Behalf Of Bert Brutzel
Sent: 15 May 2015 08:09
To: maker-devel at yandell-lab.org
Subject: [maker-devel] Genbank submission

Dear All,

how to I reformat MAKER output to valid .tbl files for Genbank submission?
I already tried quite some routes of formating the .gff to a .tbl (e.g.
sed+awk+GAG....) but I simply run into to many problems? I as well tried
to load the data into a chado, but this took over two weeks and exited with errors. Maybe someone who already submitted their MAKER annotated genome to Genbank can help me...PLEASE.

Thank you very much,
Bert

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