[maker-devel] Profiling MAKER

[Fields, Christopher J]

We have a group locally (at NCSA) who is interested in profiling MAKER with various performance analysis tools.  They would like to know CPU, RAM, I/O patterns and usage.  In particular, we’re seeing some odd performance problems on a local system which uses a large shared memory cache for storing temp/scratch data (/dev/shm).

The question is: are there any particular pain points users and developers know of or could point us to that we can start focusing on?  Any help would be greatly appereciated.

Thanks,

chris

Chris Fields
Technical Lead in Genome Informatics
High Performance Computing in Biology
University of Illinois at Urbana-Champaign
Roy J. Carver Biotechnology Center / W.M. Keck Center
Carl R. Woese Institute for Genomic Biology

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