[maker-devel] mapping annotations to a new assembly

[陈文博]

Hi All,

Recently, I updated the genome assembly, and want to update the annotation
to fit the new genome, only want to update the gene position. I used Maker.
I changed the maker_opt.ctl file as follow:

genome=$PATH_TO_mygenome

organism_type=eukaryotic

est=$PATH_TO_transcript_seq

est2genome=1


est_forward=1

After run Maker, some genes were lost. There are 14,146 transcritpts as
input. Only 13092 gene models were in the output. Anyone know the reason?
Thank you!

Best regards,
Wenbo
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