[maker-devel] Error running MAKER

[John Cornelius]

Hello, I'm using MAKER to annotate a tetraploid genome and while running
it, I encountered the following error:

#--------- command -------------#
Widget::exonerate::est2genome:
/packages/exonerate-2.2.0/bin/exonerate  -q
/tmp/maker_08Elxf/15/TRINITY_GG_19079_c1670_g1_i1.for.84770203-84771247.15.fasta
-t /tmp/maker_08Elxf/15/chr9_10L.84770203-84771247.15.fasta -Q dna -T dna
--model est2genome  --minintron 20 --maxintron 10000 --showcigar --percent
20 >
/tmp/maker_08Elxf/15/chr9_10L.84770203-84771247.TRINITY_GG_19079_c1670_g1_i1.e.exonerate
#-------------------------------#
running  est2genome search.
#--------- command -------------#
Widget::exonerate::est2genome:
/packages/exonerate-2.2.0/bin/exonerate  -q
/tmp/maker_08Elxf/10/TRINITY_GG_87963_c9694_g10_i12.for.49475083-49475985.10.fasta
-t /tmp/maker_08Elxf/10/chr6L.49475083-49475985.10.fasta -Q dna -T dna
--model est2genome  --minintron 20 --maxintron 10000 --showcigar --percent
20 >
/tmp/maker_08Elxf/10/chr6L.49475083-49475985.TRINITY_GG_87963_c9694_g10_i12.e.exonerate
#-------------------------------#

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 132376 RUNNING AT pnap-pe7-s03
=   EXIT CODE: 135
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Bus error (signal 7)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions

The the command I ran was the following:

#PBS -l walltime=240:00:00
#PBS -N MAKER
#PBS -l nodes=1:ppn=16
##PBS -q hmem
#PBS -j oe
#PBS -m abe
#PBS -M jcornelius at tgen.org
#PBS -A tgen-205000
#PBS -o /scratch/jcornelius/xenopus_laevis/maker_run

# --- load required modules --- #

module load maker

# --- run maker --- #

cd /scratch/jcornelius/xenopus_laevis/maker_run
mpiexec -n 16 maker -base XLNEURO.run1 -fix_nucleotides

I'm not sure what could be causing this error and any help would be much
appreciated. Thanks.
-- 
John Cornelius
MCB PhD Candidate
Arizona State University
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