[maker-devel] Maker MPI installation error and IO error for serial version

[Aravind PRASAD]

Hi,

I'm trying to install Maker in my cluster account. I have installed all the dependencies. But, there are two issues for which I would like to get a solution. I tried to find it from the forums but helpless.

1.       MPI installation

"flock: Function not implemented error" at src/lib/Parallel/Application/MPI.pm line 256.

./Build install



Configuring MAKER with MPI support

flock: Function not implemented

at /scratch/tools/maker_mpi/src/lib/Parallel/Application/MPI.pm line 256.

        Parallel::Application::MPI::_bind("/app/openmpi/1.10.3/intel_java/bin/mpicc", "/app/openmpi/1.10.3/intel_java/include", "blib", "") called at /scratch/users/astar/imcb/aravindp/tools/maker_mpi/src/inc/lib/MAKER/Build.pm line 277

        MAKER::Build::ACTION_build(MAKER::Build=HASH(0x1618ac0)) called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 2010

        Module::Build::Base::_call_action(MAKER::Build=HASH(0x1618ac0), "build") called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 1993

        Module::Build::Base::dispatch(MAKER::Build=HASH(0x1618ac0), "build") called at /aravindp/tools/maker_mpi/src/inc/lib/MAKER/Build.pm line 469

        MAKER::Build::ACTION_install(MAKER::Build=HASH(0x1618ac0)) called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 2010

        Module::Build::Base::_call_action(MAKER::Build=HASH(0x1618ac0), "install") called at /scratch/tools/myperl/lib/perl5/Module/Build/Base.pm line 1998

        Module::Build::Base::dispatch(MAKER::Build=HASH(0x1618ac0)) called at ./Build line 69



2.       When I run a serial version of Maker, I get an error as follow in the "makerlog.e" file.



DBD::SQLite::db do failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 109.

DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 111.

DBD::SQLite::db do failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 113.

DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 191.

DBD::SQLite::db selectcol_arrayref failed: disk I/O error at /scratch/tools/maker/bin/../lib/GFFDB.pm line 390.


Please help me with these errors as early as possible. I have double checked for all the dependencies and the file paths given while running Maker.
Awaiting your reply!



Regards,
Aravind PRASAD<mailto:aravindp at imcb.a-star.edu.sg> :: Research Officer :: Comparative and Medical Genomics Lab :: Institue of Molecular and Cell Biology (IMCB) :: Agency for Science, Technology and Research (A*STAR)
61 Biopolis Drive :: #5-04 Proteos :: Singapore 138673:: DID (+65) 6586 9573 :: Fax (+65) 6779 1117 :: http:/www.imcb.a-star.edu.sg/

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