[maker-devel] How to run Maker to get the AED?

[Carson Holt]

To get just AED without maker producing it’s own predictons, you must provide your models to model_gff in valid GFF3 format (gene/mRNA/exon/CDS multi-level features). Then supply any evidence to either est=, protein=, est_gff=, or protein_gff=.

The google location is just an archive. You cannot post there. All messages must be sent to the mailing list here —> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org <http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org>

Thanks,
Carson


> On Apr 10, 2017, at 9:08 PM, wangzhennan at ioz.ac.cn wrote:
> 
> Dear developer of Maker,
> 
>         I have used Maker to evaluate the genome annotation annotated by PASA. I have the transcript assembled by stringtie, genome (fasta), and the annotation file (gff3). How can I use the data to get the AED value from Maker? I have set the parameter of maker_opts.ctl. Can you help me to solve this? I only want to get the AED about the annotation file (gff3). Thank you very much!
> 
>         And there is also a question, I can not have a new post on https://groups.google.com/forum/#!forum/maker-devel <https://groups.google.com/forum/#!forum/maker-devel>. Why? Can you help me to solve this? Thank you!
> 
>  
>          Best,
> 
>          Wangzhennan
> 
>         
> 
> 
> 
> 
> 
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