[maker-devel] Inconsistent RepeatMasker error on draft assembly

[Zach Cohen]

Hello All,
I'm receiving a RepeatMasker on some (not all) of my scaffolds.

*Widget::RepeatMasker:*

*cd /tmp/maker_7hGhhm; /scratch/exe/RepeatMasker/RepeatMasker
/scratch/bin/or_test3.maker.output/or_test3_datastore/E3/2F/scaffold2852_size18614//theVoid.scaffold2852_size18614/0/scaffold2852_size18614.0.all.rb
-species all -dir
/scratch/bin/or_test3.maker.output/or_test3_datastore/E3/2F/scaffold2852_size18614//theVoid.scaffold2852_size18614/0
-pa 2*

*#-------------------------------#*

*ERROR: RepeatMasker failed*

*--> rank=NA, hostname=82853d8df2a5*

*ERROR: Failed while doing repeat masking*

*ERROR: Chunk failed at level:0, tier_type:1*

FAILED CONTIG:scaffold2852_size18614

*ERROR: Chunk failed at level:2, tier_type:0*

*FAILED CONTIG:scaffold2852_size18614*

*examining contents of the fasta file and run log*


I'm not sure if there is an issue with the widget itself, as this doesn't
come up for all the scaffolds and the example data seemed to run fine, or a
problem with these particular scaffolds. Thanks for any assistance you can
provide!

Best,

Z
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