[maker-devel] maker MPI problem

[Carson Holt]

This is rather vague —> “crashed the computer cluster”

Do you have a specific error?

—Carson



> On Aug 14, 2017, at 12:59 PM, zl c <chzelin at gmail.com> wrote:
> 
> Hello,
> 
>  
> I ran maker 3.0 with openmpi 2.0.2 and it crashed the computer cluster. I attached the log file. Could you help me to solve the problem?
> 
>  
> CMD:
> 
> export LD_PRELOAD=/usr/local/OpenMPI/2.0.2/gcc-6.3.0/lib/libmpi.so
> 
> export OMPI_MCA_mpi_warn_on_fork=0
> 
> mpiexec -mca btl ^openib -n $SLURM_NTASKS maker -c 1 –base genome  -g genome.fasta
> 
>  
> Thanks,
> 
> Zelin Chen
> 
>  
> --------------------------------------------
> Zelin Chen [chzelin at gmail.com <mailto:chzelin at gmail.com>]  Ph.D.
> 
> NIH/NHGRI
> Building 50, Room 5531
> 50 SOUTH DR, MSC 8004 
> BETHESDA, MD 20892-8004
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