[maker-devel] augustus failed in maker2

[Carson Holt]

Look a little further back into the STERR log to see if there are other errors further back. The issue is probably your Augustus installation. Try running it by itself (outside of MAKER) on the same dataset, and it may help identify on what is happening.

Thanks,
Carson



> On Feb 3, 2017, at 9:04 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> I am trying to add augustus to the prediction. The maker2 run well without augustus, and augustus seems installed correctly. But it returns me the following errors. Any ideas or suggestions? What I did is just to set "augustus_species=human" in the "maker_opts.ctl" file, and I am running maker on a HPC with linux system.
> 
> preparing ab-inits
> ERROR: Augustus failed
> --> rank=NA, hostname=n530
> ERROR: Failed while preparing ab-inits
> ERROR: Chunk failed at level:0, tier_type:2
> FAILED CONTIG:CasCan_contig_0
> 
> ERROR: Chunk failed at level:4, tier_type:0
> FAILED CONTIG:CasCan_contig_0
> 
> Thanks
> 
> Best
> Quanwei
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