[maker-devel] Problem with fgenesh protein IDs

[Alisa Postma]

Good afternoon

I am having problems with my all.maker.proteins.fasta file.

I ran maker with ab initio gene predictions from augustus and genemark and
I added my fgenesh gff file to the pred_gff option in the ctl file.

However, my maker protein fasta file does not give the fgenesh proteins IDs
similar to that for augustus and genemark.

For example:

>FGENESH protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|3|0|433

vs.

>maker-scaffold74-augustus-gene-0.179-mRNA-1 protein AED:0.07 eAED:0.07
QI:123|1|1|1|1|1|5|793|326

I would appreciate any advice on this matter.

Kind regards

Alisa
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