[maker-devel] Changing the genetic code table in MAKER

[Yu-Hsuan Cheng]

Hi,

This is YuHsuan Cheng, who is a PhD student from Taiwan. I want to use the
MAKER combining with SNAP to annotate ciliates genome. The genetic code for
ciliates is different from other species, so I am wondering that if there
is any option in MAKER I can change the genetic code table? I also asked
Dr. Korf about this issue, he said SNAP has no way to change the genetic
code table. I will use Augustus combining with Maker later on.
The pipeline I used previously is as followed.
1. MAKER (Hints from proteome and RNAseq)
2. MAKER to Zff
3. ~/bin/maker/exe/snap/hmm-assembler.pl snapFirst . > ../../snapFirst.hmm
and then used snapFirst.hmm as hints in MAKER

Look forward to your reply. Thank you.

Best wishes,

YuHsuan

Yu-Hsuan Cheng 鄭毓鋗
Institute of Molecular Biology
Academia Sinica
128 Academia road, Section 2
Nankang, Taipei 115
Taiwan
Phone:+886-2-2789-9216 <+886%202%202789%209216> (Lab), +886-958-216-538
<+886%20958%20216%20538> (Mobile phone)
d02b48008 at ntu.edu.tw
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