[maker-devel] augustus underpredicting

[Xabier Vázquez-Campos]

Hi,
I have been annotating a fungal genome as usual, using Busco-trained
Augustus (in addition to GeneMark and SNAP), but for some reason, Augustus
is predicting a mere 207 genes compared to 15-20k from the other two.
I've never had this problem. The genome has an unusual repeat content close
to 50%, not sure if that might suppose a problem.
Has anybody come up with any similar issue?
I also asked to Busco developers if they have any idea
https://gitlab.com/ezlab/busco/issues/49
Cheers,
Xabi

-- 
Xabier Vázquez-Campos, *PhD*
*Research Associate*
NSW Systems Biology Initiative
School of Biotechnology and Biomolecular Sciences
The University of New South Wales
Sydney NSW 2052 AUSTRALIA
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