[maker-devel] about min_protein

[Daniel Ence]

Hi Quanwei, 

Increasing the “min_protein" parameter should get ride of those very short predicted proteins. 



> On Sep 19, 2017, at 12:14 AM, Quanwei Zhang <qwzhang0601 at gmail.com> wrote:
> 
> Hello:
> 
> I am working on a rodent species and get 28k annotated genes, I wonder whether you have any suggestions about the "min_protein" parameter? 
> 
> I did not change the parameter in my current annotation. I get several very short predicted proteins (even those with only 1 amino acid). 
>  
> min_protein=0 #require at least this many amino acids in predicted proteins
> 
> Thanks
> 
> Best
> Quanwei
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