[maker-devel] about min_protein

[Quanwei Zhang]

Thank you Daniel. I wonder whether there is a suggested value for the
“min_protein" parameter (e.g., 20 amino acid, 50 amino acid?), that people
often use. I am studying a rodent species.

Thank you.

Best
Quanwei

2017-09-19 8:29 GMT-04:00 Daniel Ence <dandence at gmail.com>:

> Hi Quanwei,
>
> Increasing the “min_protein" parameter should get ride of those very short
> predicted proteins.
>
>
>
> > On Sep 19, 2017, at 12:14 AM, Quanwei Zhang <qwzhang0601 at gmail.com>
> wrote:
> >
> > Hello:
> >
> > I am working on a rodent species and get 28k annotated genes, I wonder
> whether you have any suggestions about the "min_protein" parameter?
> >
> > I did not change the parameter in my current annotation. I get several
> very short predicted proteins (even those with only 1 amino acid).
> >
> > min_protein=0 #require at least this many amino acids in predicted
> proteins
> >
> > Thanks
> >
> > Best
> > Quanwei
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>
>
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