[maker-devel] integrate gmap into Maker

[Wen Yao]

Dear Guys,


 


I am using Maker to annotate my genome sequence. However, it costs too much time.


By default, Maker use Blastn and Exonerate to align EST or assembled transcripts to the genome.


I am wondering if I can use GMAP to align the assembled transcripts to the genome and then provide the


alignment to Maker. If so, this may save much time, as GMAP is very fast.





Thanks!


 


Best regards,


 


Wen Yao
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