[maker-devel] Maker not installing

[Carson Holt]

I’m not sure what you mean by NCBI. Do you mean BLAST? If so, you probably did not format and index your input database before running BLAST. See BLAST documentation.

Also the file you are using —> muc1_genome_snap2.all.maker.snap_masked.proteins.fasta

That is not the maker result file. That is a reference fasta of raw SNAP results. The MAKER result file will have a name like this (see maker documentation) —> muc1_genome_snap2.all.maker.proteins.fasta

—Carson



> On Sep 24, 2017, at 3:24 PM, Emmanuel Nnadi <eennadi at gmail.com> wrote:
> 
> Hello,
> 
> Good day,
> 
> I am trying to assign putative gene function to the maker generated fasta. I am using NCBI
> 
> I keep getting this error
>   Command line argument error: Argument "query". File is not accessible:  `muc1_genome_snap2.all.maker.snap_masked.proteins.fasta'
> 
> What do I do?
> 
> can I use blast2go in place of ncbi command line software?
> 
> Nnadi Nnaemeka Emmanuel
> Department of Microbiology,
> Faculty of Natural and Applied Science,
> Plateau State University, Bokkos, Plateau State, Nigeria.
> Publications:  https://www.researchgate.net/profile/Emmanuel_Nnadi/publications <https://www.researchgate.net/profile/Emmanuel_Nnadi/publications>
> On Mon, Aug 28, 2017 at 2:00 PM, Ence,daniel <d.ence at ufl.edu <mailto:d.ence at ufl.edu>> wrote:
> Hi Emmanuel, In order for anyone to help you, you need post to the mailing list the command and output (including errors) of the step that didn’t work. 
> 
> Thanks,
> Daniel Ence
> 
> 
>> On Aug 27, 2017, at 10:16 AM, Emmanuel Nnadi <eennadi at gmail.com <mailto:eennadi at gmail.com>> wrote:
>> 
>> Hello all,
>> 
>> I downloaded Maker and tried to install it. I succeeded in installing all prerequisites however running maker ./build install, it showed that maker installed.
>> 
>> However trying to run maker it wouldn't run.
>> 
>> Please how do I install maker to run on local computer?
>> 
>> Thanks
>> 
>> Nnadi Nnaemeka Emmanuel
>> Department of Microbiology,
>> Faculty of Natural and Applied Science,
>> Plateau State University, Bokkos, Plateau State, Nigeria.
>> Publications:  https://www.researchgate.net/profile/Emmanuel_Nnadi/publications <https://www.researchgate.net/profile/Emmanuel_Nnadi/publications>
>> 
>>    
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> 
> 
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