[maker-devel] Using PASA assemblies with MAKER

[Federico López]

Hello,

I was wondering what might be the recommended option for using PASA2
alignment assemblies with MAKER3:

1. PASA assemblies in FASTA format (est)
2. PASA assembly structures (est_gff)
3. ORFs from PASA assemblies (protein)

And related to this question, when I use the PASA2 assembly structures in
GFF3 format, MAKER reports the error below.

"ERROR: Non-unique top level ID for..."

I suppose all the non-unique IDs need to be renamed for MAKER?

Any help is greatly appreciated.
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