[maker-devel] How to make maker output into another directory

[Emmanuel Nnadi]

Hi Carson
Thanks for your email


I tried to use the -base option to make maker output into a new directory
/mnt/data/emmanuel/Makersupport/mucuna


The log report is found below


The 'base' option is an ID used in generating names for

multiple files and directories. It is not a directory path.

You must remove all '/' characters from
'/mnt/data/emmanuel/Makersupport/mucuna'


Thanks


Emmanuel


Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
 https://www.researchgate.net/profile/Emmanuel_Nnadi/publications


On Tue, Oct 1, 2019 at 5:34 PM Carson Holt <carsonhh at gmail.com> wrote:

>
>
> On Oct 1, 2019, at 7:59 AM, Emmanuel Nnadi <eennadi at gmail.com> wrote:
>
> Hi Carson
> I want marker to output into a directory  /mnt/data/emmanuel/Makersupport.
> Please how can I make that?
>
>
>
>
> From the usage statement —>
>
>      -base    <string>   Set the base name MAKER uses to save output files.
>                                   MAKER uses the input genome file name by
> default.
>
>
>
>
>
> Also,
>
> I added RepBaseRepeatMaskerEdition-20170127.tar into the directory
> /home/emmanuel/maker/exe/RepeatMasker
>
> used tar xvf RepBaseRepeatMaskerEdition-20170127.tar to unpack it. In my /home/emmanuel/maker/exe/RepeatMasker/Libraries
> I have RMRBSeqs.embl  but running maker it tells me it repbase is not
> installed.
>
>
>
> After uncaring RepBase you have to run the ./configure script with rmblast
> installed and it will create the needed blast indexes and libraries
>
> RepeatMasker.lib
> RepeatMaskerLib.embl
> RepeatMasker.lib.nhr
> RepeatMasker.lib.nin
> RepeatMasker.lib.nsq
> RepeatMasker.lib.xnd
> RepeatMasker.lib.xni
> RepeatMasker.lib.xns
> RepeatMasker.lib.xnt
> RepeatPeps.lib
> RepeatPeps.lib.phr
> RepeatPeps.lib.pin
> RepeatPeps.lib.psq
> RepeatPeps.lib.xpd
> RepeatPeps.lib.xpi
> RepeatPeps.lib.xps
> RepeatPeps.lib.xpt
>
>
> —Carson
>
>
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