[maker-devel] How to make maker output into another directory

[Carson Holt]

> On Oct 1, 2019, at 7:59 AM, Emmanuel Nnadi <eennadi at gmail.com> wrote:
> 
> Hi Carson
> I want marker to output into a directory  /mnt/data/emmanuel/Makersupport. Please how can I make that?



From the usage statement —>

     -base    <string>   Set the base name MAKER uses to save output files.
                                  MAKER uses the input genome file name by default.



> 
> 
> Also,
> 
> I added RepBaseRepeatMaskerEdition-20170127.tar into the directory /home/emmanuel/maker/exe/RepeatMasker
> 
> used tar xvf RepBaseRepeatMaskerEdition-20170127.tar to unpack it. In my /home/emmanuel/maker/exe/RepeatMasker/Libraries I have RMRBSeqs.embl  but running maker it tells me it repbase is not installed.


After uncaring RepBase you have to run the ./configure script with rmblast installed and it will create the needed blast indexes and libraries

RepeatMasker.lib
RepeatMaskerLib.embl
RepeatMasker.lib.nhr
RepeatMasker.lib.nin
RepeatMasker.lib.nsq
RepeatMasker.lib.xnd
RepeatMasker.lib.xni
RepeatMasker.lib.xns
RepeatMasker.lib.xnt
RepeatPeps.lib
RepeatPeps.lib.phr
RepeatPeps.lib.pin
RepeatPeps.lib.psq
RepeatPeps.lib.xpd
RepeatPeps.lib.xpi
RepeatPeps.lib.xps
RepeatPeps.lib.xpt


—Carson

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