[maker-devel] How to make maker output into another directory

Emmanuel Nnadi eennadi at gmail.com
Tue Oct 1 07:59:57 MDT 2019


Hi Carson
I want marker to output into a directory  /mnt/data/emmanuel/Makersupport.
Please how can I make that?

OPTS=/home/emmanuel/maker/bin

BOPTS=/home/emmanuel/maker/bin

EXE=/home/emmanuel/maker/bin

MAKER=/home/emmanuel/maker/bin

OUT=/mnt/data/emmanuel/Makersupport


${MAKER}/maker  -cpus 26 ${OPTS}/maker_opts.ctl ${BOPTS}/maker_bopts.ctl
${EXE}/maker_exe.ctl



Also,


I added RepBaseRepeatMaskerEdition-20170127.tar into the directory
/home/emmanuel/maker/exe/RepeatMasker


used tar xvf RepBaseRepeatMaskerEdition-20170127.tar to unpack it. In
my /home/emmanuel/maker/exe/RepeatMasker/Libraries
I have RMRBSeqs.embl  but running maker it tells me it repbase is not
installed.
Nnadi Nnaemeka Emmanuel,Ph.D
Department of Microbiology,
Faculty of Natural and Applied Science,
Plateau State University, Bokkos, Plateau State, Nigeria.
+2348068124819
Publications:
 https://www.researchgate.net/profile/Emmanuel_Nnadi/publications
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