[maker-devel] Maker decision of genes when having a long transcript over several proteins

[Qihua Liang]

Dear Maker Dev Team:

I am using Maker for gene annotations and I separate different tracks in the GFF to visualize in a genome browser. As in the attached picture, there is a very long Maker gene “maker-chr9-augustus-gene-102.77”. Both Augustus and SNAP predict four short genes at this region. There is one long EST hit and three short protein hit. Maker annotates it as a long gene, I am wondering if it is indicated by EST hit? If annotating three or four short genes is the “correct” way, is it any settings I should change instead of removing the EST evidence?

Thanks
Qihua

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20190923/742590bf/attachment-0003.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: PastedGraphic-1.png
Type: image/png
Size: 220052 bytes
Desc: not available
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20190923/742590bf/attachment-0003.png>