[maker-devel] fasta_merge problem

[Maria Jose Gomez Hughes]

Hi!

I have been using maker to annotate an eukaryote genome. Since the genome was big (~3Gb), I divided it into 10 chunks with fasta_utils and run maker on each separately. After that, I used gff3_merge and fasta_merge to produce output for each of the chunks. Then I tried using these same tools for merging the different outputs into one, and while gff3_merge ran as expected, fasta_merge did not. I used the following command:

fasta_merge -o maker.all.proteins.fasta -i maker.chunk-00.proteins.fasta maker.chunk-01.proteins.fasta  maker.chunk-02.proteins.fasta  maker.chunk-03.proteins.fasta  maker.chunk-04.proteins.fasta maker.chunk-05.proteins.fasta  maker.chunk-06.proteins.fasta  maker.chunk-07.proteins.fasta maker.chunk-08.proteins.fasta  maker.chunk-09.proteins.fasta

But instead of running it just showed me the help page. I tried just running two of them, but that didn’t help either.

Any help will be much appreciated!

Maria Jose Gomez
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