[maker-devel] Unassembled RNA-Seq data to Maker

[Jason Stajich]

It uses a transcript alignment approach (blast and exonerate) which are optimized for long est to Genome alignments.
You can build transcripts first by running trinity to assemble the RNAseq reads.
On Feb 20, 2020, 1:42 PM -0800, Soomro, Tayab (AAFC/AAC) <tayab.soomro at canada.ca>, wrote:
> I am wondering why it is required for the RNA-Seq data to be assembled when passed to Maker and what would happen if I pass non-assembled Illumina RNA-Seq data.
>
>
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