[maker-devel] regarding mpich

[Carson Holt]

Use the last MPICH2 version, as MPICH3 is very different (it's the first
attempt to implement the new MPI3 protocol set, and not just a version
update).  Alternatively you can use OpenMPI.  Also use maker version 2.27
instead for MPI.

Thanks,
Carson



From:  Kenlee Nakasugi <kenlee.nakasugi at sydney.edu.au>
Date:  Sunday, 3 March, 2013 6:44 PM
To:  "maker-devel at yandell-lab.org List" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] regarding mpich

  
Hi, 

I'm trying to install mpi_maker (Maker 2.1) on a new system (intel ix
x86_64) which has mpich v3.0.2 installed, but I can't seem to get maker
Build.PL to recognize it. I tried editing the Build.pm file to point to it,
but with no success.
All dependencies have been installed and successfully recognized, it is just
MPI support that is not.

Is there anything I could modify in the install scripts to make it recognize
this? Currently, the directly path to where the mpicc and mpiexec are is
/apps/mpich/3.0.2/bin
I don't have sys admin rights for the machine, and I'm not sure if this
version of mpich was installed for shared libraries as per the GMOD
tutorial. But I have previously circumvented this with an earlier version of
mpich by modifying the Build.pm module with success. I'm wondering if
mpichv3.02 is not compatible?


Cheers, 
Ken

-- 
Kenlee Nakasugi | Research Fellow
School of Molecular Bioscience
Level 8, SMB Building (G08)| The University of Sydney | NSW | 2006
T: +61 2 9114 1321
E: kenlee.nakasugi at sydney.edu.au
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