[maker-devel] regarding mpich

[Kenlee Nakasugi]

Thanks Carson. Will Maker 2.27 be able to continue analysis on Maker 2.1 files that stopped halfway?
Thanks
Ken



On 05/03/2013, at 1:44 AM, "Carson Holt" <carsonhh at gmail.com<mailto:carsonhh at gmail.com>> wrote:

Use the last MPICH2 version, as MPICH3 is very different (it's the first attempt to implement the new MPI3 protocol set, and not just a version update).  Alternatively you can use OpenMPI.  Also use maker version 2.27 instead for MPI.

Thanks,
Carson



From: Kenlee Nakasugi <kenlee.nakasugi at sydney.edu.au<mailto:kenlee.nakasugi at sydney.edu.au>>
Date: Sunday, 3 March, 2013 6:44 PM
To: "maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org> List" <maker-devel at yandell-lab.org<mailto:maker-devel at yandell-lab.org>>
Subject: [maker-devel] regarding mpich

Hi,

I'm trying to install mpi_maker (Maker 2.1) on a new system (intel ix x86_64) which has mpich v3.0.2 installed, but I can't seem to get maker Build.PL to recognize it. I tried editing the Build.pm file to point to it, but with no success.
All dependencies have been installed and successfully recognized, it is just MPI support that is not.

Is there anything I could modify in the install scripts to make it recognize this? Currently, the directly path to where the mpicc and mpiexec are is /apps/mpich/3.0.2/bin
I don't have sys admin rights for the machine, and I'm not sure if this version of mpich was installed for shared libraries as per the GMOD tutorial. But I have previously circumvented this with an earlier version of mpich by modifying the Build.pm module with success. I'm wondering if mpichv3.02 is not compatible?


Cheers,
Ken


--
Kenlee Nakasugi | Research Fellow
School of Molecular Bioscience
Level 8, SMB Building (G08)| The University of Sydney | NSW | 2006
T: +61 2 9114 1321
E: kenlee.nakasugi at sydney.edu.au<mailto:kenlee.nakasugi at sydney.edu.au>


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