[maker-devel] regarding mpich

[Daniel Hughes]

Unlikely. Probably safer to export what has finished as gff and run it as
re-annotation if you don't want to waste what was alteady processed for
running additional iterations.

Dan

from me phone...
On Mar 4, 2013 8:52 PM, "Kenlee Nakasugi" <kenlee.nakasugi at sydney.edu.au>
wrote:

>  Thanks Carson. Will Maker 2.27 be able to continue analysis on Maker 2.1
> files that stopped halfway?
> Thanks
> Ken
>
>
>
> On 05/03/2013, at 1:44 AM, "Carson Holt" <carsonhh at gmail.com> wrote:
>
>   Use the last MPICH2 version, as MPICH3 is very different (it's the
> first attempt to implement the new MPI3 protocol set, and not just a
> version update).  Alternatively you can use OpenMPI.  Also use maker
> version 2.27 instead for MPI.
>
>  Thanks,
> Carson
>
>
>
>   From: Kenlee Nakasugi <kenlee.nakasugi at sydney.edu.au>
> Date: Sunday, 3 March, 2013 6:44 PM
> To: "maker-devel at yandell-lab.org List" <maker-devel at yandell-lab.org>
> Subject: [maker-devel] regarding mpich
>
>  Hi,
>
> I'm trying to install mpi_maker (Maker 2.1) on a new system (intel ix
> x86_64) which has mpich v3.0.2 installed, but I can't seem to get maker
> Build.PL to recognize it. I tried editing the Build.pm file to point to it,
> but with no success.
> All dependencies have been installed and successfully recognized, it is
> just MPI support that is not.
>
> Is there anything I could modify in the install scripts to make it
> recognize this? Currently, the directly path to where the mpicc and mpiexec
> are is /apps/mpich/3.0.2/bin
> I don't have sys admin rights for the machine, and I'm not sure if this
> version of mpich was installed for shared libraries as per the GMOD
> tutorial. But I have previously circumvented this with an earlier version
> of mpich by modifying the Build.pm module with success. I'm wondering if
> mpichv3.02 is not compatible?
>
>
> Cheers,
> Ken
>
>   --
> Kenlee Nakasugi | Research Fellow
> School of Molecular Bioscience
> Level 8, SMB Building (G08)| The University of Sydney | NSW | 2006
> T: +61 2 9114 1321
> E: kenlee.nakasugi at sydney.edu.au
>
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