[maker-devel] Recommendations for visualization?

[Barry Moore]

This is a VERY good point Chris.  I think the new web-apollo is developing into a great tool, but there is now a gapping hole in the area of a desktop application (i.e. no server setup) to view/edit genome annotations.  I'd love to hear what others are using.  Our group has been using a combination of old Apollo instances, Web-Apollo and Gbrowse.

B

On Nov 12, 2013, at 12:18 PM, Fields, Christopher J wrote:

> Barry, Carson,
> 
> Are there any recommendations re: visualizing MAKER-generated GFF3?  I know it’s currently geared towards Apollo integration, but as everything is moving towards Webapollo, attempts at finding the old local client Apollo code are a bit of an archaeological expedition (not to mention Apollo has always been a joy to set up from code :).  Is everyone still trying to use the old Apollo, since it seems to no longer be supported?
> 
> At the moment I am really thinking of working on simple scripts to make IGV-friendly input (and possibly similar Artemis for our smaller genome projects), but I don’t want to repeat work already in place.
> 
> chris
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Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
--------------------------------------------
(801) 585-3543




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