[maker-devel] Recommendations for visualization?

[Fields, Christopher J]

I have considered using GMOD in the Cloud (we are likely to set something like this up on our local OpenStack when it’s up and running), but as a quick assessment of a test run it seems a bit overkill.

chris

On Nov 12, 2013, at 4:03 PM, Barry Moore <barry.utah at gmail.com<mailto:barry.utah at gmail.com>> wrote:

This is a VERY good point Chris.  I think the new web-apollo is developing into a great tool, but there is now a gapping hole in the area of a desktop application (i.e. no server setup) to view/edit genome annotations.  I'd love to hear what others are using.  Our group has been using a combination of old Apollo instances, Web-Apollo and Gbrowse.

B

On Nov 12, 2013, at 12:18 PM, Fields, Christopher J wrote:

Barry, Carson,

Are there any recommendations re: visualizing MAKER-generated GFF3?  I know it’s currently geared towards Apollo integration, but as everything is moving towards Webapollo, attempts at finding the old local client Apollo code are a bit of an archaeological expedition (not to mention Apollo has always been a joy to set up from code :).  Is everyone still trying to use the old Apollo, since it seems to no longer be supported?

At the moment I am really thinking of working on simple scripts to make IGV-friendly input (and possibly similar Artemis for our smaller genome projects), but I don’t want to repeat work already in place.

chris
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Barry Moore
Research Scientist
Dept. of Human Genetics
University of Utah
Salt Lake City, UT 84112
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