[maker-devel] Exon Type in MAKER GFF Output

[Carson Holt]

That information is not explicit in GFF3 format.  You have to capture all
exons parented onto the mRNA, then sort them to identify if the exon is
5-prime, 3-prime, internal, or single exon.

--Carson


From:  Chan Kuang Lim <ckuanglim at gmail.com>
Date:  Thursday, September 12, 2013 1:42 AM
To:  <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Exon Type in MAKER GFF Output

Dear Maker developers,

I have a question regarding the GFF output of MAKER. When we look at CDS and
Exon, we do not know whether they are initial, internal, terminal or single.
How can we capture the exon type from MAKER output?

Thanks,
Chan KL
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