[maker-devel] maker_functional_gff

[Mack, Brian]

Hi, I am trying to use the maker_functional_gff program to add functional annotations to my maker gff file. I used blastp with the tabular "-outfmt 6" option against the uniprot uniref-50. I put these results in the maker_functional_gff program using "maker_functional_gff  uniref-50  blastp-output  maker.gff" but I get the following errors and no updating of the names in my maker gff file:

Use of uninitialized value $id in hash element at /home/b/maker/bin/maker_functional_gff line 142, <$IN> line 16924097.
Use of uninitialized value $id in hash element at /home/b/maker/bin/maker_functional_gff line 144, <$IN> line 16924097.
Can't parse details from FASTA header: >UniRef50_K1R9E3 Uncharacterized protein n=1 Tax=Crassostrea gigas RepID=K1R9E3_CRAGI

Use of uninitialized value $id in hash element at /home/b/maker/bin/maker_functional_gff line 142, <$IN> line 16924128.
Use of uninitialized value $id in hash element at /home/b/maker/bin/maker_functional_gff line 144, <$IN> line 16924128.
Can't parse details from FASTA header: >UniRef50_K1R9E4 Transporter n=2 Tax=Mollusca RepID=K1R9E4_CRAGI

Any ideas of what I'm doing wrong?

Brian




This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://yandell-lab.org/pipermail/maker-devel_yandell-lab.org/attachments/20140407/aef605a4/attachment-0002.html>