[maker-devel] Maker fails to annotate large contigs

[Carson Holt]

What are the errors from the STDERR printed to screen?  That will tell you
the specifics of why it is failing.  Redirect to a file to capture it and I
can take a look as well.  Note you may need to set a higher number of
retries to get it to run again.

Thanks,
Carson

From:  "Schmidt, Sarah" <S.M.Schmidt at uva.nl>
Date:  Thursday, January 30, 2014 at 7:30 AM
To:  "maker-devel at yandell-lab.org" <maker-devel at yandell-lab.org>
Subject:  [maker-devel] Maker fails to annotate large contigs

Dear Carson, 

When running maker on my genome assembly (roughly 60 Mb), it keeps failing
the largest contigs with either error:

DIED RANK 3:4:0:3
DIED COUNT 2

or 

DIED RANK 4:4:0:0
DIED COUNT 1
DIED RANK 4
DIED COUNT 1.

Do you know what might be the problem?

I am using Maker 2.28 with MPI support.

Thanks in advance,

Sarah


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