[maker-devel] Fwd: AED plot

[Michael Campbell]

Hi Saranya,

I fixed the AED_cdf_generator.pl scrip and added it to the svn repository
for MAKER so it will be available in the next MAKE release. If you are
using the svn repository you can do an svn update and get the new version
of the script in the MAKER bin. If not I've attached a copy of the script
to this email (I removed the .pl extension to the file since some email
servers will block .pl files). let me know if you have any more problems
with it.

Thanks,
Mike

On Sun, Nov 9, 2014 at 9:33 AM, Saranya Sankaranarayanan <
sarasank at umail.iu.edu> wrote:

> Hi Mike,
>
> Please find the gff3 file attached with this email. Thanks a lot for the
> very prompt response.
>
> Sincerely,
> Saranya Sankaranarayanan
> Master's Student, SoIC
> Indiana University
>
> On Sun, Nov 9, 2014 at 1:01 AM, Michael Campbell <
> michael.s.campbell1 at gmail.com> wrote:
>
>> Hi Sranya,
>>
>> If you can send me a copy of your gff3 file I can look at it and see why
>> you are getting the error. That is a pretty young accessory script so there
>> may be something in your file that it has't seen before.
>>
>> Thanks,
>> Mike
>>
>> On Sat, Nov 8, 2014 at 11:58 AM, Saranya Sankaranarayanan <
>> sarasank at umail.iu.edu> wrote:
>>
>>> Hi Maker authors,
>>>
>>> I am new to using Maker. I have a few basic questions.
>>>
>>> I have the maker annotation complete and I ran the
>>>
>>> gff3_merge -n -d genome_master_datastore_index.log -  to create the gff
>>> file
>>>
>>> After that, I used the script  AED_cdf_generator.pl to obtain the AED
>>> plot, while I get the error:
>>>
>>>
>>> Use of uninitialized value $total in division (/) at
>>> ./AED_cdf_generator.pl line 43.
>>> Illegal division by zero at ./AED_cdf_generator.pl line 43.
>>>
>>> I parsed my gff file as:
>>> AED_cdf_generator.pl -b 0.025 maker.gff
>>>
>>> Could anyone please help me with this error? Thank you. It looks like no
>>> value is parsed to the variable total, but I am not able to decipher why.
>>>
>>> Regards,
>>> Saranya
>>>
>>>
>>> _______________________________________________
>>> maker-devel mailing list
>>> maker-devel at box290.bluehost.com
>>> http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org
>>>
>>>
>>
>>
>> --
>> Michael Campbell MS, RD.
>> Doctoral Candidate
>> Eccles Institute of Human Genetics
>> University of Utah
>> 15 North 2030 East, Room 2100
>> Salt Lake City, UT 84112-5330
>> ph:585-3543
>>
>>
>


-- 
Michael Campbell MS, RD.
Doctoral Candidate
Eccles Institute of Human Genetics
University of Utah
15 North 2030 East, Room 2100
Salt Lake City, UT 84112-5330
ph:585-3543
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