[maker-devel] NNN in maker output transcript

[Wen Yao]

Dear guys,


Recently, I run maker to annotate a genome. I found that the transcript fasta file output by Maker contains "NNN". Is this normal?
If not, what's going on? Is this a bug of maker or my configuration of maker is not correct? 
I told maker to use snap and augustus for de novo prediction and use exonerate to align ESTs and proteins.


Thanks!


Wen Yao
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